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Setup fees on subscriptions: when and how to charge

When a once-off setup fee on a subscription makes sense, how to price and explain it, and how to bill it with cards, debit orders and invoices.

Published
Reading time
5 min read
By
CentraPoint Team
On this page
  1. When a setup fee makes sense
  2. Setup fee or higher monthly price?
  3. Present it honestly
  4. Waivers and promotions
  5. How to bill a setup fee
  6. Track setup fees separately
  7. How CentraPoint helps
  8. Frequently asked questions

A setup fee is a once-off charge at the start of a subscription, on top of the recurring price. Internet providers charge for installation, security companies for equipment and connection, software businesses for onboarding and data import, gyms for joining. Done well, a setup fee covers real upfront cost and filters out customers who are not serious. Done badly, it becomes the reason prospects don't sign up.

This guide covers when a setup fee is worth charging, how to present it, and how to bill it cleanly with each collection method.

When a setup fee makes sense

A setup fee is easiest to justify when there is a real, visible cost at the start:

  • Installation or equipment: routers, alarm panels, access tags, hardware.
  • Onboarding work: configuration, data import, training sessions.
  • Third-party costs: activation fees you pay to a supplier.
  • Admin cost of joining: membership cards, registration with a governing body.

It is harder to justify when the customer can't see what they are paying for. A "setup fee" on a self-service software sign-up, where the customer does all the setup themselves, tends to reduce conversions more than it adds revenue.

Setup fee or higher monthly price?

You can recover the same upfront cost in two ways:

Approach Good for Watch out for
Separate setup fee Covering real upfront cost immediately; filtering out short-term customers A higher barrier to signing up
Built into the recurring price A lower first payment and simpler pricing Losing money on customers who cancel early

Some businesses combine both: a setup fee that is waived for customers who commit to annual billing or a minimum term. See annual vs monthly billing.

Present it honestly

Hidden or surprise fees damage trust and lead to disputes. Show the setup fee:

  • On your pricing page, next to the recurring price, not only in the terms. See SaaS pricing page best practices.
  • On the quote and at checkout, with the first payment total clearly shown.
  • On the first invoice, as its own line with a clear description.

Explain what the fee covers in one sentence: "Once-off installation and router" is far easier to accept than "Admin fee".

Waivers and promotions

Waiving the setup fee is a common promotion because it removes the biggest barrier to signing up without reducing your recurring revenue. If you waive it:

  • Make the waiver time-limited and state the end date.
  • Consider tying it to a minimum term, and say so clearly in the terms.
  • Track how waived customers behave compared with those who paid, so you can see whether the promotion attracts the right customers.

A discount code is the simplest way to run a waiver for a specific campaign. See coupon strategy.

How to bill a setup fee

Card subscriptions

The simplest approach is to add the setup fee to the first charge, so that the customer pays the setup fee and the first period together at checkout. Show the total clearly before they pay.

Debit orders

A debit order mandate usually authorises a fixed recurring amount. Rather than collecting a different first amount by debit order, invoice the setup fee separately and collect it by card, instant EFT or EFT. See debit order mandate requirements.

Invoiced subscriptions

For customers on invoice, include the setup fee as a separate line on the first invoice. Business customers can then see exactly what they are paying for, and the VAT treatment is clear.

Refunds and cancellations

Decide in advance whether the setup fee is refundable if a customer cancels within the first period, and put it in your terms. If the fee paid for equipment that the customer returns, a partial refund may be fair. Record any refund with a credit note. See credit note vs refund.

Track setup fees separately

Setup fees are once-off revenue. Keep them out of your recurring revenue metrics, or MRR will look better than it is in months with many sign-ups. See MRR vs ARR.

How CentraPoint helps

In CentraPoint, each subscription plan can have a setup fee: a once-off amount added to the first charge. For debit order subscriptions, the setup fee is invoiced separately instead, because a mandate collects a fixed amount. Plans also support free trials, quantities and coupons, so you can run a setup-fee waiver as a discount code at hosted checkout or on a subscription.

Branded hosted checkout pages present your plans, invoices carry a pay-by-link, and the report builder lets your finance team track subscriptions and payments the way they need. See subscriptions and recurring billing, the packages and plans documentation, and pricing.

Frequently asked questions

Is a setup fee the same as a deposit?

No. A deposit is part of the total price paid upfront; a setup fee is an additional once-off charge for getting started. See how to take deposits and part payments online.

Should setup fees be refundable?

It depends on what the fee pays for. Fees that cover equipment or work already done are often non-refundable or partly refundable. State your policy in your terms before the customer pays.

Do setup fees count as recurring revenue?

No. Report them as once-off revenue so that MRR reflects only what customers pay every month.

  • #setup fees
  • #subscriptions
  • #pricing
  • #debit orders