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How to choose a payment gateway in South Africa: a checklist

How to choose a payment gateway in South Africa: a practical checklist covering payment methods, true cost, payouts, recurring billing, integrations and support.

Published
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6 min read
By
CentraPoint Team
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  1. Step 1: Map how your customers pay
  2. Step 2: Work out the real cost
  3. Step 3: Check payouts and cash flow
  4. Step 4: Confirm the features your model needs
  5. Step 5: Look at onboarding and risk
  6. Step 6: Test the checkout yourself
  7. Step 7: Assess developer and support quality
  8. A quick shortlist by business type
  9. How CentraPoint fits in
  10. Frequently asked questions

To choose a payment gateway in South Africa, start with how your customers want to pay (cards, instant EFT, Capitec Pay, QR wallets, buy now pay later), then compare the full cost at your real transaction mix, how quickly and cheaply you get paid out, and whether the gateway supports what you actually need: recurring billing, payment links, your e-commerce platform, or an API. There's no single "best" gateway; the right one fits your customers, your volumes and your business model.

This checklist walks through the questions worth asking before you sign up, in the order that usually matters most.

Step 1: Map how your customers pay

Before looking at any provider, write down who pays you and how.

  • Consumers buying online mostly use cards, but instant EFT and bank-app payments such as Capitec Pay are popular with customers who prefer not to type card details.
  • Younger or unbanked-leaning audiences may want QR wallets (SnapScan, Zapper, Scan to Pay) or buy now, pay later options.
  • Businesses paying invoices often prefer EFT, so you may want payment links on invoices plus a way to record manual transfers.
  • Customers elsewhere in Africa may need mobile money, such as M-Pesa or MTN MoMo, which points you towards a pan-African gateway.
  • International customers need a gateway that accepts foreign cards at a reasonable rate.

If you only take one thing from this guide: a gateway that's cheap on cards but lacks the method half your customers use will cost you more in abandoned checkouts than you save in fees.

Step 2: Work out the real cost

Headline rates are only a starting point. Line up for each provider:

  • Percentage and fixed fee per transaction, for each method you'll use
  • Whether fees are quoted including or excluding VAT
  • Monthly, setup or minimum fees (many online gateways have none)
  • Payout or withdrawal fees, and any fee for faster payouts
  • Refund and chargeback fees
  • Volume discounts and the threshold at which you can negotiate

Then model a realistic month. For example: 400 card payments averaging R450.00 and 150 instant EFT payments averaging R1,200.00. Plug in each provider's published rates and compare the total, not the percentage. The fixed fee matters a lot when your average basket is small. Our breakdown of payment gateway fees in South Africa shows how to run this comparison with current published rates.

Step 3: Check payouts and cash flow

Ask how and when money reaches your bank account.

  • Settlement timing. Next business day, two business days, or on request?
  • Balance model. Some gateways pay out automatically; others hold a balance that you withdraw, sometimes for a fee.
  • Faster payouts. Is instant or same-day payout available, and at what price?
  • Reporting. Can you download a settlement report that ties each payout to the individual payments and fees inside it? This decides how painful month-end reconciliation will be.

Step 4: Confirm the features your model needs

If you... Make sure the gateway offers...
Sell subscriptions or memberships Tokenised saved cards or native subscriptions, plus a clear retry process
Invoice customers Payment links or payment requests you can put on an invoice
Run an online store A tested plugin for your platform (WooCommerce, Shopify, Wix and so on)
Build your own app A documented API, sandbox, signed webhooks and refunds via API
Sell in person as well Card machines or tap-to-pay that report into the same dashboard
Split revenue with partners Split payments or payouts to third parties
Sell across Africa Local methods and currencies in each target market

Recurring billing deserves extra attention. Some gateways run subscriptions natively; others give you tokenised cards and leave the scheduling to your billing system. For debit order collections you'll typically need a separate debit order provider. See card tokenisation explained for how saved-card billing works.

Step 5: Look at onboarding and risk

Every gateway must verify your business (often called KYC or FICA checks) before paying you out. Ask:

  • What documents you need: company registration, director IDs, proof of bank account, proof of address
  • Whether sole proprietors can sign up, or only registered companies
  • How long approval usually takes
  • Whether your industry is restricted or considered high-risk
  • What happens to your funds if there's a dispute or a spike in chargebacks

A gateway that won't onboard your industry is a non-starter, so check this early.

Step 6: Test the checkout yourself

Create a test account and pay yourself on a phone, over mobile data. Notice:

  • How many screens it takes from "pay" to "done"
  • Whether 3D Secure approval is smooth in your own banking app
  • Whether the page looks trustworthy and matches your brand
  • What the customer sees if the payment fails

Your customers will experience exactly this, so don't skip it. Small frictions here cost real sales.

Step 7: Assess developer and support quality

Even if you're using a plugin, someone will eventually need the documentation. Check that it's current, that there's a sandbox environment, that webhooks are signed so you can verify them, and that support is reachable by a human when a payout goes missing. Read the provider's status page history if one is published.

A quick shortlist by business type

These are starting points, not endorsements; always check each provider's current pricing and features on its own site.

  • Small online store or social seller: a gateway with low setup effort, payment links and a plugin for your store, such as Payfast, Yoco or Paystack.
  • Pay-by-bank focus: Ozow, which specialises in instant EFT and also offers card payments.
  • Mid-size or enterprise, multi-country: providers that position themselves for scale and orchestration, such as Peach Payments, DPO Pay or Stitch.
  • Debit order collections: a debit order specialist such as Netcash.

Many businesses end up with more than one. That's often sensible, as we explain in our guide to multiple payment gateways.

How CentraPoint fits in

CentraPoint isn't a gateway; it connects to the gateways you contract with directly, including PayFast, Netcash, Ozow, Yoco, Peach Payments, PayGate, Paystack, Flutterwave, DPO Pay, Pesapal, M-Pesa and MTN MoMo, plus manual EFT. Each is enabled as a module, so you can start with one and add another later without rebuilding your invoicing, subscriptions or reconciliation. See the full list on our gateways page.

Frequently asked questions

What is the cheapest payment gateway in South Africa?

It depends on your payment mix and average transaction size. A provider with a lower percentage but a higher fixed fee can cost more on small baskets, so model a typical month using each provider's current published rates.

Can a sole proprietor get a payment gateway in South Africa?

Some gateways accept sole proprietors as well as registered companies, but requirements differ. Check each provider's onboarding requirements before you apply.

Do I need a separate merchant account?

Many online gateways in South Africa let small businesses start without their own bank merchant account. Larger businesses sometimes negotiate their own merchant account for better rates, which some providers support.

Should I use more than one payment gateway?

It can make sense if you need methods one provider doesn't offer, want a fallback during outages, or sell in several countries. The trade-off is more integrations and reconciliation to manage.

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  • #online payments
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